PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0003s0288.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 286aa    MW: 32366.5 Da    PI: 9.9391
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0003s0288.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.21.4e-1557143186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +Liea  ++  +l+rg+lk+++W++v++++   ++++  ++ +qCk++++ l+k+yk +k+      s++ s++++f++l+
  Mapoly0003s0288.1.p  57 CWSEGATFTLIEAWGDRYMELNRGNLKQKHWKDVAEAVnnrEDGKTPKTDVQCKNRLDTLKKKYKLEKNKVAT--SGAGSKWAFFEKLD 143
                          7*************************************9977888899*****************99988885..788889******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-2755145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEEDLHAHAH HGAHGSADAS QQHHALTLSL PGIHSTPTSR SLKLIGDGNE KHGREDCWSE  60
GATFTLIEAW GDRYMELNRG NLKQKHWKDV AEAVNNREDG KTPKTDVQCK NRLDTLKKKY  120
KLEKNKVATS GAGSKWAFFE KLDELIGTSR KHKKSAKSQK RKRDRVDDGE PKTFNNASTN  180
TKSKESPDMT DSCPHATTPG PEGKIVKKRK LQDGPFKDLA RAIIKFGEVY ERIESAKQQQ  240
LADLETKRME FTKDLELQRM QLFMQTQVEL AKMKHVKHGS TEHYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209KIVKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002971286.17e-84hypothetical protein SELMODRAFT_68039, partial
SwissprotQ9LJG81e-45ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA9NWZ63e-83A9NWZ6_PICSI; Putative uncharacterized protein
TrEMBLD8RJB48e-84D8RJB4_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ278842e-83(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.14e-51sequence-specific DNA binding transcription factors